Help on BioloMICSNet

How to search our databases button-SmallHelp

The BioloMICSNet Software facilitates interogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( button-SmallHelp) allows you to customize the query built.

The following link : BioloMICS Search will redirects you to the Search page

Similarity based on on-line pair-wise alignments button-SmallHelp

The BioloMICSNet Software facilitates identifications by the perfomance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirects you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification button-SmallHelp

The BioloMICSNet Software has facilitated perfomance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification : button-SmallHelp

The following link : BioloMICS Polyphasic Identification will redirects you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website
Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.mycologylab.org/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.mycologylab.org/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)





Information details on Database :


Fields description for Layout : Bibliography

Field CaptionField NameField CodeField type
 AuthorsE1E : Text, administrative field
 Author(s) of bookE2E : Text, administrative field
 EditorsE3E : Text, administrative field
 YearH1H : DateTime (YYYYMMDDHHmmss)
 PageE4E : Text, administrative field
 CollectionE5E : Text, administrative field
 ISBNE6E : Text, administrative field
 Num_E7E : Text, administrative field
 NumBE8E : Text, administrative field
 ISSNE9E : Text, administrative field
 VolumeE10E : Text, administrative field
 KeywordsE11E : Text, administrative field
 Edit_RefE12E : Text, administrative field
 JournalE13E : Text, administrative field
 RemarksE14E : Text, administrative field
 UrlE15E : Text, administrative field

Examples of hyperlinks for Table Bibliography in Database Mycologylab
Example 1: Record #1 [Intérêt systématique de la recherche de l'uréase chez les levures et organismes levuriformes], Display all Fields
http://www.mycologylab.org/BioloMICS.aspx?Table=Bibliography&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'Intérêt systématique de la recherche de l'uréase chez les levures et organismes levuriformes' , Display all Fields, Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Bibliography&Name=Intérêt systématique de la recherche de l'uréase chez les levures et organismes levuriformes&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Intérêt' , Display all Fields, Non Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Bibliography&Name=Intérêt&Fields=All&ExactMatch=F
Example 4: Record Name containing 'The' , Display Field 'E1' (Authors), Non Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Bibliography&Name=The&Fields=E1&ExactMatch=F
Example 5: Record Name is 'The use of stored frozen yeast starter in wine production' , Display Field 'E1' (Authors) and 'E15' (Url) , Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Bibliography&Name=The use of stored frozen yeast starter in wine production&Fields=E1&Fields=E15&ExactMatch=T


Fields description for Layout : Taxonomy

Field CaptionField NameField CodeField type
 Higher taxonomic levelR1RLink : Link to multiple records
 GenusE1E : Text, administrative field
 SpeciesE2E : Text, administrative field
 SubtaxonE3E : Text, administrative field
 AuthorE4E : Text, administrative field
 SubAuthorE5E : Text, administrative field
 BasionymE6E : Text, administrative field
 TypeE7E : Text, administrative field
 CurrentE8E : Text, administrative field
 BibliographyE9RLink : Link to multiple records
 RemarksE10E : Text, administrative field
 StatusT1T : Discrete data, single state
 Type strainE11E : Text, administrative field
 Anamorph-teleomorphT2T : Discrete data, single state
 Obligate synonymR2RLink : Link to multiple records
 Associated anamorph-teleomorphR3RLink : Link to multiple records

Examples of hyperlinks for Table Taxonomy in Database Mycologylab
Example 1: Record #1 [Fungi], Display all Fields
http://www.mycologylab.org/BioloMICS.aspx?Table=Taxonomy&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'Fungi' , Display all Fields, Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Taxonomy&Name=Fungi&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Fungi' , Display all Fields, Non Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Taxonomy&Name=Fungi&Fields=All&ExactMatch=F
Example 4: Record Name containing 'Zygomycota' , Display Field 'R1' (Higher taxonomic level), Non Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Taxonomy&Name=Zygomycota&Fields=R1&ExactMatch=F
Example 5: Record Name is 'Zygomycota' , Display Field 'R1' (Higher taxonomic level) and 'R3' (Associated anamorph-teleomorph) , Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=Taxonomy&Name=Zygomycota&Fields=R1&Fields=R3&ExactMatch=T


Fields description for Layout : ITS Database

Field CaptionField NameField CodeField type
Molecular data   
Sequences   
 rDNA sequences ITSN3NLink : Link to Sequence
General information   
Administration   
 WM numberE44E : Text, administrative field
 Other collection numberE46E : Text, administrative field
 Species nameE55E : Text, administrative field
 Corresponding anamorph/teleomorph/SynonymE57E : Text, administrative field
 Date isolatedE95E : Text, administrative field
Origin of the strain   
 CountryE62E : Text, administrative field
 Specific sourceE67E : Text, administrative field
 Site of sampleE68E : Text, administrative field
 StateE74E : Text, administrative field
 SourceE83E : Text, administrative field
Patient's data   
 Underlying diseaseE82E : Text, administrative field

Examples of hyperlinks for Table ITS Database in Database Mycologylab
Example 1: Record #1 [WM 6], Display all Fields
http://www.mycologylab.org/BioloMICS.aspx?Table=ITS Database&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'WM 6' , Display all Fields, Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=ITS Database&Name=WM 6&Fields=All&ExactMatch=T
Example 3: Record Name containing 'WM' , Display all Fields, Non Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=ITS Database&Name=WM&Fields=All&ExactMatch=F
Example 4: Record Name containing 'WM' , Display Field 'N3' (rDNA sequences ITS), Non Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=ITS Database&Name=WM&Fields=N3&ExactMatch=F
Example 5: Record Name is 'WM 39' , Display Field 'N3' (rDNA sequences ITS) and 'E82' (Underlying disease) , Exact Match Searching
http://www.mycologylab.org/BioloMICS.aspx?Table=ITS Database&Name=WM 39&Fields=N3&Fields=E82&ExactMatch=T

Contact(s) for Database :

The following link : BioloMICS Contact information will redirects you to the BioloMICS Contact information page


Disclaimer and Limitation of Liability:
BioAware makes no representation or warranty whatsoever regarding the performance, use or results of the software, including without limitation, any express or implied warranties, including without limitation, the implied warranties of merchant ability and fitness for a particular purpose. In no event shall BioAware be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including without limitation, procurement of substitute goods or services, loss of use, data, or profits, or business interruption) however caused and not withstanding any theory of liability, whether in contrast, strict liability, or tort (including negligence or otherwise) arising in any way out of the software, even if advised of the possibility or probality of such damage. BioAware shall beat no responsability for the accuracy or quality of information or other results (The Information) obtained through its provision of the software, nor the use or misuse of any information by any user of the information, unauthorized use of any information protected by intellectual property rights. The user acknowledges and agrees that BioAware is merely permitting access to the information supplied throught the software, and that the user is responsible for the accuracy, truthfulness and all other matters relating to such information. Further, the user acknowledges and agrees that the software is subject to interruption from time to time and the user's information may not be accessed by its intended user.